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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpdl3aAcid sphingomyelinase-like phosphodiesterase. (440 aa)    
Predicted Functional Partners:
vwde
Uncharacterized protein.
      
 0.636
brinp1
Bone morphogenetic protein/retinoic acid inducible neural-specific 1.
   
  
 0.633
LOC101076350
BTB (POZ) domain containing 10a.
      
 0.595
ttc9c
Tetratricopeptide repeat domain 9C.
      
 0.581
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.546
arhgap1
Rho GTPase activating protein 1.
      
 0.497
LOC101067169
Sulfide quinone oxidoreductase.
      
 0.436
ENSTRUP00000054247
Sulfide quinone oxidoreductase.
      
 0.436
ccn6
Cellular communication network factor 6.
      
 0.424
LOC101068776
Glutathione S-transferase theta 1a.
      
 0.404
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.