brix1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

brix1

Brix domain containing 2. (341 aa)

Predicted Functional Partners:

ebna1bp2

0.999

nifk

0.998

rrp1b

0.997

nip7

0.996

gtpbp4

0.996

rpf1

0.996

noc3l

0.995

rsl1d1

0.995

wdr12

0.995

noc2l

0.995

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
brix1	ebna1bp2	ENSTRUP00000028803	ENSTRUP00000052172	Brix domain containing 2.	EBNA1 binding protein 2.	0.999
brix1	gtpbp4	ENSTRUP00000028803	ENSTRUP00000009193	Brix domain containing 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.996
brix1	nifk	ENSTRUP00000028803	ENSTRUP00000012509	Brix domain containing 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.998
brix1	nip7	ENSTRUP00000028803	ENSTRUP00000000555	Brix domain containing 2.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.996
brix1	noc2l	ENSTRUP00000028803	ENSTRUP00000082710	Brix domain containing 2.	NOC2-like nucleolar associated transcriptional repressor.	0.995
brix1	noc3l	ENSTRUP00000028803	ENSTRUP00000008412	Brix domain containing 2.	NOC3-like DNA replication regulator.	0.995
brix1	rpf1	ENSTRUP00000028803	ENSTRUP00000048889	Brix domain containing 2.	Ribosome production factor 1 homolog.	0.996
brix1	rrp1b	ENSTRUP00000028803	ENSTRUP00000045087	Brix domain containing 2.	Ribosomal RNA processing 1.	0.997
brix1	rsl1d1	ENSTRUP00000028803	ENSTRUP00000043461	Brix domain containing 2.	Ribosomal L1 domain containing 1.	0.995
brix1	wdr12	ENSTRUP00000028803	ENSTRUP00000051015	Brix domain containing 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
ebna1bp2	brix1	ENSTRUP00000052172	ENSTRUP00000028803	EBNA1 binding protein 2.	Brix domain containing 2.	0.999
ebna1bp2	gtpbp4	ENSTRUP00000052172	ENSTRUP00000009193	EBNA1 binding protein 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.993
ebna1bp2	nifk	ENSTRUP00000052172	ENSTRUP00000012509	EBNA1 binding protein 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.997
ebna1bp2	nip7	ENSTRUP00000052172	ENSTRUP00000000555	EBNA1 binding protein 2.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.995
ebna1bp2	noc2l	ENSTRUP00000052172	ENSTRUP00000082710	EBNA1 binding protein 2.	NOC2-like nucleolar associated transcriptional repressor.	0.995
ebna1bp2	noc3l	ENSTRUP00000052172	ENSTRUP00000008412	EBNA1 binding protein 2.	NOC3-like DNA replication regulator.	0.986
ebna1bp2	rpf1	ENSTRUP00000052172	ENSTRUP00000048889	EBNA1 binding protein 2.	Ribosome production factor 1 homolog.	0.994
ebna1bp2	rrp1b	ENSTRUP00000052172	ENSTRUP00000045087	EBNA1 binding protein 2.	Ribosomal RNA processing 1.	0.994
ebna1bp2	rsl1d1	ENSTRUP00000052172	ENSTRUP00000043461	EBNA1 binding protein 2.	Ribosomal L1 domain containing 1.	0.995
ebna1bp2	wdr12	ENSTRUP00000052172	ENSTRUP00000051015	EBNA1 binding protein 2.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995