Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
g3bp2Zgc:56304. (504 aa)    
Predicted Functional Partners:
H2V528_TAKRU
Caprin-1_dimer domain-containing protein.
   
 
 0.924
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.916
LOC101069808
LsmAD domain-containing protein.
   
 
 0.840
atxn2
Ataxin 2.
   
 
 0.838
nufip2
Uncharacterized protein.
   
 
 0.832
rack1
Receptor for activated C kinase 1.
   
 
 0.760
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.749
LOC101070680
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.749
LOC101066456
Ubiquitin associated protein 2b.
   
 
 0.746
ubap2
Ubiquitin associated protein 2a.
   
 
 0.746
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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