LOC101071801 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101071801

Ferric-chelate reductase 1-like. (284 aa)

Predicted Functional Partners:

LOC101078768

0.751

mrpl46

0.720

mrpl3

0.716

mrpl27

0.701

mrps35

0.695

mrpl4

0.685

mrps16

0.685

H2UD51_TAKRU

0.682

mrpl11

0.675

mrpl15

0.664

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2UD51_TAKRU	LOC101071801	ENSTRUP00000034870	ENSTRUP00000028833	Mitochondrial ribosomal protein L41.	Ferric-chelate reductase 1-like.	0.682
H2UD51_TAKRU	LOC101078768	ENSTRUP00000034870	ENSTRUP00000053750	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L23.	0.985
H2UD51_TAKRU	mrpl11	ENSTRUP00000034870	ENSTRUP00000029806	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.982
H2UD51_TAKRU	mrpl15	ENSTRUP00000034870	ENSTRUP00000018634	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L15.	0.959
H2UD51_TAKRU	mrpl27	ENSTRUP00000034870	ENSTRUP00000078103	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L27.	0.978
H2UD51_TAKRU	mrpl3	ENSTRUP00000034870	ENSTRUP00000077541	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.977
H2UD51_TAKRU	mrpl4	ENSTRUP00000034870	ENSTRUP00000021382	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L4.	0.966
H2UD51_TAKRU	mrpl46	ENSTRUP00000034870	ENSTRUP00000053505	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein L46.	0.975
H2UD51_TAKRU	mrps16	ENSTRUP00000034870	ENSTRUP00000071946	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein S16.	0.976
H2UD51_TAKRU	mrps35	ENSTRUP00000034870	ENSTRUP00000042134	Mitochondrial ribosomal protein L41.	Mitochondrial ribosomal protein S35.	0.876
LOC101071801	H2UD51_TAKRU	ENSTRUP00000028833	ENSTRUP00000034870	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L41.	0.682
LOC101071801	LOC101078768	ENSTRUP00000028833	ENSTRUP00000053750	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L23.	0.751
LOC101071801	mrpl11	ENSTRUP00000028833	ENSTRUP00000029806	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.675
LOC101071801	mrpl15	ENSTRUP00000028833	ENSTRUP00000018634	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L15.	0.664
LOC101071801	mrpl27	ENSTRUP00000028833	ENSTRUP00000078103	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L27.	0.701
LOC101071801	mrpl3	ENSTRUP00000028833	ENSTRUP00000077541	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.716
LOC101071801	mrpl4	ENSTRUP00000028833	ENSTRUP00000021382	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L4.	0.685
LOC101071801	mrpl46	ENSTRUP00000028833	ENSTRUP00000053505	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein L46.	0.720
LOC101071801	mrps16	ENSTRUP00000028833	ENSTRUP00000071946	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein S16.	0.685
LOC101071801	mrps35	ENSTRUP00000028833	ENSTRUP00000042134	Ferric-chelate reductase 1-like.	Mitochondrial ribosomal protein S35.	0.695