Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101062828Synaptotagmin IIa. (432 aa)    
Predicted Functional Partners:
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.926
LOC101069563
V-SNARE coiled-coil homology domain-containing protein.
   
 0.820
LOC101072029
Vesicle-associated membrane protein 1.
   
 0.820
LOC101072029-2
Zgc:92912.
   
 0.820
ENSTRUP00000084617
annotation not available
   
 0.820
ENSTRUP00000076224
annotation not available
    
 0.762
LOC101073763
V-SNARE coiled-coil homology domain-containing protein.
    
 0.762
syt4
Synaptotagmin IV.
   
 0.730
syt11
Synaptotagmin XIb.
   
 0.730
LOC101076376
Syntaxin 2b; Belongs to the syntaxin family.
   
 0.722
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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