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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mybpc1Myosin binding protein C, slow type. (1202 aa)    
Predicted Functional Partners:
TNNC1
Troponin C type 1b (slow).
   
 0.752
wdr18
WD repeat domain 18.
   
 0.678
tex10
Testis expressed 10.
   
 0.638
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.616
ipo5
Karyopherin (importin) beta 3.
   
 
 0.500
bdh2
3-hydroxybutyrate dehydrogenase, type 2.
    
 0.489
LOC101070646
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.486
psmc3
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
    
 
 0.461
hao2
Hydroxyacid oxidase 2 (long chain).
   
  
 0.455
gpd1
Glycerol-3-phosphate dehydrogenase [NAD(+)].
      
 0.455
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.