Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ctdnep1CTD nuclear envelope phosphatase 1b. (250 aa)    
Predicted Functional Partners:
LOC101064440
Lipin 1.
    
 0.880
LOC101063325
Zgc:123305.
    
 0.880
lpin1
Si:ch73-21k16.1.
    
 0.880
LOC101076308
Lipin 2.
    
 0.880
Lpin2
Phosphatidate phosphatase LPIN2 isoform X1.
    
 0.880
acap1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
      
 0.775
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
   
  
 0.773
ENSTRUP00000054432
Solute carrier family 35 member G2b.
      
 0.713
H2RSQ3_TAKRU
Uncharacterized protein.
   
 0.700
H2S433_TAKRU
Uncharacterized protein.
   
 0.700
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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