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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vezf1Vascular endothelial zinc finger 1. (463 aa)    
Predicted Functional Partners:
ENSTRUP00000086209
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate b.1.
     
 0.485
H2SKN2_TAKRU
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
 0.459
LOC101077240
DNA (cytosine-5-)-methyltransferase 3 alpha b; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.446
pagr1
PAXIP1 associated glutamate-rich protein 1.
     
 0.443
mysm1
Histone H2A deubiquitinase MYSM1.
    
  0.442
myf6
Myogenic factor 6; Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein (By similarity).
    
 0.439
bub3
BUB3 mitotic checkpoint protein.
      
 0.432
LOC101073137
Uncharacterized protein.
      
 0.427
dennd3
DENN/MADD domain containing 3a.
      
 0.427
LOC101061845
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.417
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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