H2TWF0_TAKRU protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H2TWF0_TAKRU

TATA-box binding protein associated factor 4. (448 aa)

Predicted Functional Partners:

taf7l

0.932

taf1

0.932

taf11

0.932

taf2

0.932

taf6

0.932

taf9

0.899

taf10

0.899

taf13

0.899

taf6l

0.869

taf3

0.855

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2TWF0_TAKRU	taf1	ENSTRUP00000029009	ENSTRUP00000039888	TATA-box binding protein associated factor 4.	Transcription initiation factor TFIID subunit.	0.932
H2TWF0_TAKRU	taf10	ENSTRUP00000029009	ENSTRUP00000039300	TATA-box binding protein associated factor 4.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.899
H2TWF0_TAKRU	taf11	ENSTRUP00000029009	ENSTRUP00000050701	TATA-box binding protein associated factor 4.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.932
H2TWF0_TAKRU	taf13	ENSTRUP00000029009	ENSTRUP00000071053	TATA-box binding protein associated factor 4.	Transcription initiation factor TFIID subunit 13.	0.899
H2TWF0_TAKRU	taf2	ENSTRUP00000029009	ENSTRUP00000059494	TATA-box binding protein associated factor 4.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.932
H2TWF0_TAKRU	taf3	ENSTRUP00000029009	ENSTRUP00000043296	TATA-box binding protein associated factor 4.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.855
H2TWF0_TAKRU	taf6	ENSTRUP00000029009	ENSTRUP00000060692	TATA-box binding protein associated factor 4.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.932
H2TWF0_TAKRU	taf6l	ENSTRUP00000029009	ENSTRUP00000032187	TATA-box binding protein associated factor 4.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.869
H2TWF0_TAKRU	taf7l	ENSTRUP00000029009	ENSTRUP00000007157	TATA-box binding protein associated factor 4.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.932
H2TWF0_TAKRU	taf9	ENSTRUP00000029009	ENSTRUP00000002470	TATA-box binding protein associated factor 4.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.899
taf1	H2TWF0_TAKRU	ENSTRUP00000039888	ENSTRUP00000029009	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 4.	0.932
taf1	taf10	ENSTRUP00000039888	ENSTRUP00000039300	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.998
taf1	taf11	ENSTRUP00000039888	ENSTRUP00000050701	Transcription initiation factor TFIID subunit.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
taf1	taf13	ENSTRUP00000039888	ENSTRUP00000071053	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 13.	0.998
taf1	taf2	ENSTRUP00000039888	ENSTRUP00000059494	Transcription initiation factor TFIID subunit.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
taf1	taf3	ENSTRUP00000039888	ENSTRUP00000043296	Transcription initiation factor TFIID subunit.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.994
taf1	taf6	ENSTRUP00000039888	ENSTRUP00000060692	Transcription initiation factor TFIID subunit.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
taf1	taf6l	ENSTRUP00000039888	ENSTRUP00000032187	Transcription initiation factor TFIID subunit.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.979
taf1	taf7l	ENSTRUP00000039888	ENSTRUP00000007157	Transcription initiation factor TFIID subunit.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
taf1	taf9	ENSTRUP00000039888	ENSTRUP00000002470	Transcription initiation factor TFIID subunit.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998