STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2TWF0_TAKRUTATA-box binding protein associated factor 4. (448 aa)    
Predicted Functional Partners:
taf1
Transcription initiation factor TFIID subunit.
   
 0.947
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.947
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.947
taf9
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.946
taf8
TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.945
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.945
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.945
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.944
taf13
Transcription initiation factor TFIID subunit 13.
    
 0.942
taf3
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.
    
 0.937
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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