sgta protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sgta

Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha. (343 aa)

Predicted Functional Partners:

LOC101062737

0.955

bag6

0.947

get4

0.939

get3

0.930

Sec61b

0.869

ahsa1

0.780

GET1

0.744

CLPB

0.743

gosr2

0.725

psmd14

0.723

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	ahsa1	ENSTRUP00000025045	ENSTRUP00000052840	ClpB homolog, mitochondrial AAA ATPase chaperonin.	AHA1, activator of heat shock protein ATPase homolog 1b.	0.802
CLPB	get3	ENSTRUP00000025045	ENSTRUP00000016528	ClpB homolog, mitochondrial AAA ATPase chaperonin.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.501
CLPB	get4	ENSTRUP00000025045	ENSTRUP00000075437	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Golgi to ER traffic protein 4 homolog; As part of a cytosolic protein quality control complex, the bag6/bat3 complex, maintains misfolded and hydrophobic patches- containing proteins in a soluble state and participates to their proper delivery to the endoplasmic reticulum or alternatively can promote their sorting to the proteasome where they undergo degradation. The bag6/bat3 complex is involved in the post-translational delivery of tail-anchored/type II transmembrane proteins to the endoplasmic reticulum membrane. Similarly, the bag6/bat3 complex also functions as a sorting platform [...]	0.431
CLPB	psmd14	ENSTRUP00000025045	ENSTRUP00000043942	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Proteasome 26S subunit, non-ATPase 14.	0.472
CLPB	sgta	ENSTRUP00000025045	ENSTRUP00000029013	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.	0.743
GET1	LOC101062737	ENSTRUP00000003017	ENSTRUP00000062804	Guided entry of tail-anchored proteins factor 1.	Ubiquitin-like domain-containing protein.	0.767
GET1	Sec61b	ENSTRUP00000003017	ENSTRUP00000028690	Guided entry of tail-anchored proteins factor 1.	Uncharacterized protein.	0.756
GET1	get3	ENSTRUP00000003017	ENSTRUP00000016528	Guided entry of tail-anchored proteins factor 1.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.995
GET1	get4	ENSTRUP00000003017	ENSTRUP00000075437	Guided entry of tail-anchored proteins factor 1.	Golgi to ER traffic protein 4 homolog; As part of a cytosolic protein quality control complex, the bag6/bat3 complex, maintains misfolded and hydrophobic patches- containing proteins in a soluble state and participates to their proper delivery to the endoplasmic reticulum or alternatively can promote their sorting to the proteasome where they undergo degradation. The bag6/bat3 complex is involved in the post-translational delivery of tail-anchored/type II transmembrane proteins to the endoplasmic reticulum membrane. Similarly, the bag6/bat3 complex also functions as a sorting platform [...]	0.815
GET1	sgta	ENSTRUP00000003017	ENSTRUP00000029013	Guided entry of tail-anchored proteins factor 1.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.	0.744
LOC101062737	GET1	ENSTRUP00000062804	ENSTRUP00000003017	Ubiquitin-like domain-containing protein.	Guided entry of tail-anchored proteins factor 1.	0.767
LOC101062737	Sec61b	ENSTRUP00000062804	ENSTRUP00000028690	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.457
LOC101062737	bag6	ENSTRUP00000062804	ENSTRUP00000014707	Ubiquitin-like domain-containing protein.	BCL2 associated athanogene 6.	0.990
LOC101062737	get3	ENSTRUP00000062804	ENSTRUP00000016528	Ubiquitin-like domain-containing protein.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.965
LOC101062737	get4	ENSTRUP00000062804	ENSTRUP00000075437	Ubiquitin-like domain-containing protein.	Golgi to ER traffic protein 4 homolog; As part of a cytosolic protein quality control complex, the bag6/bat3 complex, maintains misfolded and hydrophobic patches- containing proteins in a soluble state and participates to their proper delivery to the endoplasmic reticulum or alternatively can promote their sorting to the proteasome where they undergo degradation. The bag6/bat3 complex is involved in the post-translational delivery of tail-anchored/type II transmembrane proteins to the endoplasmic reticulum membrane. Similarly, the bag6/bat3 complex also functions as a sorting platform [...]	0.991
LOC101062737	psmd14	ENSTRUP00000062804	ENSTRUP00000043942	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, non-ATPase 14.	0.810
LOC101062737	sgta	ENSTRUP00000062804	ENSTRUP00000029013	Ubiquitin-like domain-containing protein.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.	0.955
Sec61b	GET1	ENSTRUP00000028690	ENSTRUP00000003017	Uncharacterized protein.	Guided entry of tail-anchored proteins factor 1.	0.756
Sec61b	LOC101062737	ENSTRUP00000028690	ENSTRUP00000062804	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.457
Sec61b	bag6	ENSTRUP00000028690	ENSTRUP00000014707	Uncharacterized protein.	BCL2 associated athanogene 6.	0.466