galnt12 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

galnt12

Polypeptide N-acetylgalactosaminyltransferase. (579 aa)

Predicted Functional Partners:

gcnt1

0.946

C1galt1c1

0.824

LOC101064009

0.727

apof

0.727

wdr44

0.714

galnt7

0.682

LOC101069823

0.624

LOC101061209

0.570

galnt11

0.522

gcnt3

0.489

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1galt1c1	LOC101064009	ENSTRUP00000024269	ENSTRUP00000033441	C1GALT1-specific chaperone 1.	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	0.992
C1galt1c1	apof	ENSTRUP00000024269	ENSTRUP00000052751	C1GALT1-specific chaperone 1.	Apolipoprotein F.	0.992
C1galt1c1	galnt11	ENSTRUP00000024269	ENSTRUP00000063521	C1GALT1-specific chaperone 1.	Polypeptide N-acetylgalactosaminyltransferase.	0.776
C1galt1c1	galnt12	ENSTRUP00000024269	ENSTRUP00000029033	C1GALT1-specific chaperone 1.	Polypeptide N-acetylgalactosaminyltransferase.	0.824
C1galt1c1	galnt7	ENSTRUP00000024269	ENSTRUP00000080327	C1GALT1-specific chaperone 1.	Polypeptide N-acetylgalactosaminyltransferase.	0.718
C1galt1c1	gcnt1	ENSTRUP00000024269	ENSTRUP00000075590	C1GALT1-specific chaperone 1.	Uncharacterized protein.	0.938
C1galt1c1	gcnt3	ENSTRUP00000024269	ENSTRUP00000029284	C1GALT1-specific chaperone 1.	Glucosaminyl (N-acetyl) transferase 3, mucin type.	0.938
LOC101061209	galnt11	ENSTRUP00000027922	ENSTRUP00000063521	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	Polypeptide N-acetylgalactosaminyltransferase.	0.570
LOC101061209	galnt12	ENSTRUP00000027922	ENSTRUP00000029033	Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.	Polypeptide N-acetylgalactosaminyltransferase.	0.570
LOC101064009	C1galt1c1	ENSTRUP00000033441	ENSTRUP00000024269	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	C1GALT1-specific chaperone 1.	0.992
LOC101064009	apof	ENSTRUP00000033441	ENSTRUP00000052751	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Apolipoprotein F.	0.901
LOC101064009	galnt11	ENSTRUP00000033441	ENSTRUP00000063521	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Polypeptide N-acetylgalactosaminyltransferase.	0.740
LOC101064009	galnt12	ENSTRUP00000033441	ENSTRUP00000029033	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Polypeptide N-acetylgalactosaminyltransferase.	0.727
LOC101064009	galnt7	ENSTRUP00000033441	ENSTRUP00000080327	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Polypeptide N-acetylgalactosaminyltransferase.	0.775
LOC101064009	gcnt1	ENSTRUP00000033441	ENSTRUP00000075590	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Uncharacterized protein.	0.951
LOC101064009	gcnt3	ENSTRUP00000033441	ENSTRUP00000029284	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	Glucosaminyl (N-acetyl) transferase 3, mucin type.	0.951
LOC101069823	galnt12	ENSTRUP00000077697	ENSTRUP00000029033	Coronin; Belongs to the WD repeat coronin family.	Polypeptide N-acetylgalactosaminyltransferase.	0.624
LOC101069823	wdr44	ENSTRUP00000077697	ENSTRUP00000042862	Coronin; Belongs to the WD repeat coronin family.	WD repeat domain 44.	0.677
apof	C1galt1c1	ENSTRUP00000052751	ENSTRUP00000024269	Apolipoprotein F.	C1GALT1-specific chaperone 1.	0.992
apof	LOC101064009	ENSTRUP00000052751	ENSTRUP00000033441	Apolipoprotein F.	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a.	0.901