Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NXNL1Nucleoredoxin like 1. (218 aa)    
Predicted Functional Partners:
tnni1
Troponin I type 1a (skeletal, slow).
      
 0.561
LOC101073031
Potassium channel, subfamily V, member 2b; Belongs to the potassium channel family.
   
  
 0.550
C8orf37
Protein C8orf37 homolog isoform X2.
      
 0.499
LOC101079867
Leukotriene C4 synthase.
      
 0.476
ankle1
Zgc:85936.
    
 
 0.468
vsx1
Visual system homeobox 1 homolog, chx10-like.
   
  
 0.453
prdx4
Peroxiredoxin 4.
      
 0.442
LOC101065799
Rho GTPase activating protein 20.
      
 0.429
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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