Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ppp4cSerine/threonine-protein phosphatase. (311 aa)    
Predicted Functional Partners:
ppp4r1
WRNPLPNID domain-containing protein.
   
 0.989
ppp4r3a
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
   
 
 0.986
LOC101063274
Uncharacterized protein.
   
 0.983
ppp4r2
Protein phosphatase 4, regulatory subunit 2b.
   
 0.983
ppp4r3b
Protein phosphatase 4, regulatory subunit 3B.
   
 
 0.980
igbp1
Immunoglobulin (CD79A) binding protein 1.
    
 
 0.977
tiprl
TIP41, TOR signaling pathway regulator-like (S. cerevisiae).
    
 
 0.966
ccdc6
Coiled-coil domain containing 6a.
    
 
 0.952
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
   
 0.945
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
   
 0.941
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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