STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ghdcGH3 domain containing. (635 aa)    
Predicted Functional Partners:
rbp1
Retinol binding protein 1, cellular, tandem duplicate 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.600
aar2
AAR2 splicing factor.
    
   0.571
LOC101066755
Caveolae associated protein 1b.
   
  
 0.546
cavin1
Caveolae associated protein 1a.
   
  
 0.546
dhx58
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
  
 0.509
LOC101071575
Phosphoinositide phospholipase C.
   
  
 0.493
hcrt
Hypocretin (orexin) neuropeptide precursor.
   
  
 0.493
mc2r
G_PROTEIN_RECEP_F1_2 domain-containing protein.
     
 0.477
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.