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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2TWS9_TAKRUUncharacterized protein. (840 aa)    
Predicted Functional Partners:
Drc1
Dynein regulatory complex protein 1 isoform X1.
   
  
 0.626
ttc25
Tetratricopeptide repeat domain 25.
      
 0.604
ENSTRUP00000048905
Uncharacterized protein.
   
  
 0.600
bbs1
Bardet-Biedl syndrome 1.
      
 0.591
ENSTRUP00000053191
Uncharacterized protein.
   
  
 0.569
cfap45
Cilia and flagella associated protein 45.
   
  
 0.568
cluh
Clustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family.
      
 0.565
armc9
Armadillo repeat containing 9.
      
 0.545
NRGN
Neurogranin.
      
 0.528
LOC101061393
Radial spoke head component 4A.
  
  
 0.518
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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