Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcc1lRCC1 like. (461 aa)    
Predicted Functional Partners:
trub2
TruB pseudouridine (psi) synthase family member 2.
    
 0.963
nme6
Nucleoside diphosphate kinase.
    
 
 0.958
pde6d
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]
    
 
 0.927
mterf3
Mitochondrial transcription termination factor 3.
    
  0.893
LOC101069088
RNA pseudouridine synthase D4.
    
 0.844
pla2g6
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
   0.755
LOC105419521
Whirlin-like isoform X1.
    
 
 0.741
ngrn
Neugrin, neurite outgrowth associated.
    
 0.732
LOC101066875
RPGR1_C domain-containing protein.
    
 
 0.722
LOC101077614
TPR_REGION domain-containing protein.
   
 0.713
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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