STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101063381Vitamin D receptor b. (440 aa)    
Predicted Functional Partners:
ncor2
Nuclear receptor corepressor 2.
    
 0.757
ncor1
Nuclear receptor corepressor 1.
    
 0.757
LOC101077948
Nuclear receptor subfamily 1, group D, member 2b.
   
0.727
LOC445936
Nuclear receptor subfamily 1, group D, member 2a.
   
0.727
LOC101064914
Retinoid x receptor, beta b.
   
0.727
LOC101079168
Uncharacterized protein.
   
0.727
RXRB
Uncharacterized protein.
   
0.727
rxra
Retinoid X receptor, alpha a.
   
0.727
ncoa1
Nuclear receptor coactivator 1.
    
 0.714
LOC101077966
Nuclear receptor coactivator 3.
    
 0.714
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.