STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRDM6PR/SET domain 6. (637 aa)    
Predicted Functional Partners:
cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
    
 
 0.952
prdm14
PR domain containing 14.
    
 0.924
syce3
Zgc:194246.
    
   0.782
cbfa2t3
CBFA2/RUNX1 partner transcriptional co-repressor 3.
    
 
 0.656
runx1t1
RUNX1 partner transcriptional co-repressor 1.
    
 
 0.656
camkmt
Calmodulin-lysine N-methyltransferase.
     
  0.650
plod1
Fe2OG dioxygenase domain-containing protein.
     
  0.650
plod2
Fe2OG dioxygenase domain-containing protein.
     
  0.650
pstpip2
Proline-serine-threonine phosphatase interacting protein 2.
      
 0.609
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
      
 0.572
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.