gtf3c2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gtf3c2

General transcription factor 3C polypeptide 2. (954 aa)

Predicted Functional Partners:

GTF3C5

0.999

gtf3c4

0.999

gtf3c3

0.999

gtf3c1

0.999

gtf3c6

0.924

bdp1

0.859

LOC101066443

0.804

LOC101067672

0.804

polr3a

0.764

c1qbp

0.721

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTF3C5	LOC101066443	ENSTRUP00000003517	ENSTRUP00000041459	Uncharacterized protein.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.906
GTF3C5	LOC101067672	ENSTRUP00000003517	ENSTRUP00000064424	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.906
GTF3C5	bdp1	ENSTRUP00000003517	ENSTRUP00000054422	Uncharacterized protein.	SANT domain-containing protein.	0.968
GTF3C5	gtf3c1	ENSTRUP00000003517	ENSTRUP00000074448	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.999
GTF3C5	gtf3c2	ENSTRUP00000003517	ENSTRUP00000029358	Uncharacterized protein.	General transcription factor 3C polypeptide 2.	0.999
GTF3C5	gtf3c3	ENSTRUP00000003517	ENSTRUP00000030541	Uncharacterized protein.	General transcription factor IIIC, polypeptide 3.	0.999
GTF3C5	gtf3c4	ENSTRUP00000003517	ENSTRUP00000013163	Uncharacterized protein.	General transcription factor IIIC, polypeptide 4.	0.999
GTF3C5	gtf3c6	ENSTRUP00000003517	ENSTRUP00000048991	Uncharacterized protein.	TFIIIC_sub6 domain-containing protein.	0.825
GTF3C5	polr3a	ENSTRUP00000003517	ENSTRUP00000034398	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.791
LOC101066443	GTF3C5	ENSTRUP00000041459	ENSTRUP00000003517	BRF1 RNA polymerase III transcription initiation factor subunit b.	Uncharacterized protein.	0.906
LOC101066443	LOC101067672	ENSTRUP00000041459	ENSTRUP00000064424	BRF1 RNA polymerase III transcription initiation factor subunit b.	TFIIB-type domain-containing protein.	0.552
LOC101066443	bdp1	ENSTRUP00000041459	ENSTRUP00000054422	BRF1 RNA polymerase III transcription initiation factor subunit b.	SANT domain-containing protein.	0.979
LOC101066443	gtf3c1	ENSTRUP00000041459	ENSTRUP00000074448	BRF1 RNA polymerase III transcription initiation factor subunit b.	B-block_TFIIIC domain-containing protein.	0.921
LOC101066443	gtf3c2	ENSTRUP00000041459	ENSTRUP00000029358	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor 3C polypeptide 2.	0.804
LOC101066443	gtf3c3	ENSTRUP00000041459	ENSTRUP00000030541	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 3.	0.967
LOC101066443	gtf3c4	ENSTRUP00000041459	ENSTRUP00000013163	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIIC, polypeptide 4.	0.884
LOC101066443	gtf3c6	ENSTRUP00000041459	ENSTRUP00000048991	BRF1 RNA polymerase III transcription initiation factor subunit b.	TFIIIC_sub6 domain-containing protein.	0.743
LOC101066443	polr3a	ENSTRUP00000041459	ENSTRUP00000034398	BRF1 RNA polymerase III transcription initiation factor subunit b.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.905
LOC101067672	GTF3C5	ENSTRUP00000064424	ENSTRUP00000003517	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.906
LOC101067672	LOC101066443	ENSTRUP00000064424	ENSTRUP00000041459	TFIIB-type domain-containing protein.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.552