STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078475Ash1 (absent, small, or homeotic)-like (Drosophila). (2916 aa)    
Predicted Functional Partners:
USP34
Uncharacterized protein.
   
 
 0.899
setd2
SET domain containing 2, histone lysine methyltransferase.
   
  
 0.894
LOC101074415
MRG domain-containing protein.
   
 
 0.829
LOC101065432
Mortality factor 4 like 1.
   
 
 0.829
LOC101070020
Zinc finger CCCH-type containing 11A.
   
  
 0.815
LOC101074167
WD_REPEATS_REGION domain-containing protein.
    
 0.778
rbbp4
Retinoblastoma binding protein 4.
    
 0.778
kmt2b
Uncharacterized protein.
   
 
0.763
LOC101073804
Bromodomain and PHD finger containing, 3b.
   
 
 0.750
LOC101075987
Bromodomain and PHD finger containing, 3a.
   
 
 0.750
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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