STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074690Major facilitator superfamily domain containing 2aa. (492 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
    
  0.618
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
  0.583
pudp
Pseudouridine 5'-phosphatase.
  
  
 0.470
xylb
Xylulokinase homolog (H. influenzae).
  
  
 0.442
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.438
LOC101077253
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.438
gapdh-2
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.438
gne
Putative UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase.
     
 0.406
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.