Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Fash1Achaete-scute family bHLH transcription factor 1b. (194 aa)    
Predicted Functional Partners:
LOC101079401
Transcription factor 3a.
   
 0.749
tcf3
Transcription factor 3b.
   
 0.749
tcf12
Transcription factor 12.
   
 0.749
TCF4
Transcription factor 4.
   
 0.749
LOC101072332
Transcription factor 12-like.
   
 0.730
LOC101065161
Uncharacterized protein.
   
 0.621
hes4
Hairy-related 9.
   
 0.621
LOC101074717
Hairy-related 8.2.
   
 0.621
hes1
Hairy-related 6.
   
 0.621
lrig1
Leucine-rich repeats and immunoglobulin-like domains 1.
      
 0.564
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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