r3hdm1 protein (Takifugu rubripes) - STRING interaction network

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Score

r3hdm1

R3H domain containing 1. (376 aa)

Predicted Functional Partners:

polr3b

0.509

elp5

0.495

copz1

0.491

LOC101064659

0.442

UPF1

0.442

LOC101078026

0.439

babam2

0.434

nif3l1

0.426

pmpcb

0.421

LOC101077128

0.421

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101064659	UPF1	ENSTRUP00000000308	ENSTRUP00000012294	Uncharacterized protein.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.900
LOC101064659	r3hdm1	ENSTRUP00000000308	ENSTRUP00000029450	Uncharacterized protein.	R3H domain containing 1.	0.442
LOC101077128	r3hdm1	ENSTRUP00000074332	ENSTRUP00000029450	Ubiquinol-cytochrome c reductase core protein 1.	R3H domain containing 1.	0.421
LOC101078026	polr3b	ENSTRUP00000071611	ENSTRUP00000021789	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
LOC101078026	r3hdm1	ENSTRUP00000071611	ENSTRUP00000029450	RNA polymerase I and III subunit D.	R3H domain containing 1.	0.439
UPF1	LOC101064659	ENSTRUP00000012294	ENSTRUP00000000308	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	Uncharacterized protein.	0.900
UPF1	r3hdm1	ENSTRUP00000012294	ENSTRUP00000029450	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	R3H domain containing 1.	0.442
babam2	nif3l1	ENSTRUP00000086985	ENSTRUP00000021780	BRISC and BRCA1 A complex member 2.	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).	0.520
babam2	r3hdm1	ENSTRUP00000086985	ENSTRUP00000029450	BRISC and BRCA1 A complex member 2.	R3H domain containing 1.	0.434
copz1	r3hdm1	ENSTRUP00000061257	ENSTRUP00000029450	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	R3H domain containing 1.	0.491
elp5	r3hdm1	ENSTRUP00000028796	ENSTRUP00000029450	Elongator acetyltransferase complex subunit 5.	R3H domain containing 1.	0.495
nif3l1	babam2	ENSTRUP00000021780	ENSTRUP00000086985	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).	BRISC and BRCA1 A complex member 2.	0.520
nif3l1	r3hdm1	ENSTRUP00000021780	ENSTRUP00000029450	NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae).	R3H domain containing 1.	0.426
pmpcb	r3hdm1	ENSTRUP00000004969	ENSTRUP00000029450	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	R3H domain containing 1.	0.421
polr3b	LOC101078026	ENSTRUP00000021789	ENSTRUP00000071611	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase I and III subunit D.	0.987
polr3b	r3hdm1	ENSTRUP00000021789	ENSTRUP00000029450	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	R3H domain containing 1.	0.509
r3hdm1	LOC101064659	ENSTRUP00000029450	ENSTRUP00000000308	R3H domain containing 1.	Uncharacterized protein.	0.442
r3hdm1	LOC101077128	ENSTRUP00000029450	ENSTRUP00000074332	R3H domain containing 1.	Ubiquinol-cytochrome c reductase core protein 1.	0.421
r3hdm1	LOC101078026	ENSTRUP00000029450	ENSTRUP00000071611	R3H domain containing 1.	RNA polymerase I and III subunit D.	0.439
r3hdm1	UPF1	ENSTRUP00000029450	ENSTRUP00000012294	R3H domain containing 1.	Putative regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an rent1-rent2-rent3 surveillance complex is believed to activate NMD (By similarity).	0.442