Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101076531Thymidylate kinase. (212 aa)    
Predicted Functional Partners:
tyms
Thymidylate synthetase.
  
 
 0.982
LOC101076410
Nucleoside diphosphate kinase.
  
 
 0.975
tk1
Thymidine kinase.
  
 
 0.974
dut
Deoxyuridine triphosphatase.
  
 
 0.967
dctd
dCMP deaminase.
    
 0.966
nme6
Nucleoside diphosphate kinase.
    
 0.957
ENSTRUP00000038486
annotation not available
    
 0.955
ak9
Adenylate kinase 9.
    
 0.955
LOC115248709
Thymidine kinase 2.
  
 
 0.953
LOC101067543
NDK domain-containing protein; Belongs to the NDK family.
  
 
 0.949
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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