STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LDLRAD3Low density lipoprotein receptor class A domain containing 3. (340 aa)    
Predicted Functional Partners:
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.744
b4galt7
Beta1,4-galactosyltransferase 7.
    
 
 0.707
LOC101077791
Uncharacterized protein.
    
 0.703
LOC101078337
Matrix-remodelling associated 8a.
      
 0.696
LOC101067091
Matrix-remodelling associated 8b.
      
 0.696
SUMF2
Sulfatase modifying factor 2.
    
 0.620
dph6
Diphthamine biosynthesis 6.
      
 0.587
phb
Prohibitin.
      
 0.541
rpgrip1l
RPGRIP1 like.
    
 
 0.520
svop
SV2 related protein a.
      
 0.517
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.