STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmc2Transmembrane channel-like protein. (926 aa)    
Predicted Functional Partners:
cib3
Calcium and integrin binding family member 3.
    
 0.814
cib2
Calcium and integrin binding family member 2.
    
 0.814
tmie
Transmembrane inner ear.
     
 0.784
LOC101062303
Otolith matrix protein.
   
 
 0.621
LOC101061371
LHFPL tetraspan subfamily member 5a.
   
 0.620
Lhfpl5
LHFPL tetraspan subfamily member 5b.
   
 0.620
srrm4
Serine/arginine repetitive matrix protein 4.
    
 0.614
rpgrip1l
RPGRIP1 like.
    
 0.609
stox1
Storkhead box 1.
      
 0.606
Adgrv1
Uncharacterized protein.
    
 
 0.568
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.