STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
e2f2Si:ch211-160f23.5. (440 aa)    
Predicted Functional Partners:
LOC115246431
Retinoblastoma 1.
   
 0.982
tfdp1
Transcription factor.
   
 0.972
ccna2
Cyclin A2; Belongs to the cyclin family.
   
 0.967
ccna1
Cyclin-A1 isoform X1.
   
 0.967
cdk2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
    
 0.947
rbl1
Retinoblastoma-like 1 (p107).
   
 0.913
LOC101070901
Retinoblastoma-like 2 (p130).
   
 0.913
LOC101069848
Retinoblastoma-associated protein.
   
 0.828
e2f1
E2F transcription factor 1.
  
 
0.761
LOC101077745
E2F transcription factor 5.
  
 
0.741
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.