STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rp9RP9 pre-mRNA splicing factor. (221 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
    
 
 0.760
snw1
SNW domain containing 1.
   
 
 0.741
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.722
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.676
nkap
NFKB activating protein.
   
 
 0.673
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
  
 0.601
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
      
 0.552
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
      
 0.550
frg1
Protein FRG1; Binds to mRNA in a sequence-independent manner. May play a role in regulation of pre-mRNA splicing or in the assembly of rRNA into ribosomal subunits. May be involved in mRNA transport. May be involved in epigenetic regulation of muscle differentiation through regulation of activity of the histone-lysine N-methyltransferase KMT5B. Belongs to the FRG1 family.
   
 
 0.508
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.502
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.