STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rp9RP9 pre-mRNA splicing factor. (221 aa)    
Predicted Functional Partners:
nkap
NFKB activating protein.
   
 
 0.794
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
  
 0.756
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
      
 0.745
prpf8
Pre-mRNA processing factor 8.
      
 0.741
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
      
 0.739
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.721
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
      
 0.695
ENSTRUP00000079148
U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1.
      
 0.695
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.673
nkapd1
Zgc:162339.
   
   0.657
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.