nufip2 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nufip2

Uncharacterized protein. (764 aa)

Predicted Functional Partners:

trip12

0.866

fmr1

0.758

LOC101069808

0.729

g3bp2

0.607

G3bp1

0.607

qser1

0.604

ddx6

0.596

LOC101070680

0.596

H2V528_TAKRU

0.573

dstyk

0.561

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G3bp1	H2V528_TAKRU	ENSTRUP00000064808	ENSTRUP00000088053	GTPase activating protein (SH3 domain) binding protein 1.	Caprin-1_dimer domain-containing protein.	0.847
G3bp1	LOC101069808	ENSTRUP00000064808	ENSTRUP00000017523	GTPase activating protein (SH3 domain) binding protein 1.	LsmAD domain-containing protein.	0.635
G3bp1	LOC101070680	ENSTRUP00000064808	ENSTRUP00000056299	GTPase activating protein (SH3 domain) binding protein 1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.403
G3bp1	ddx6	ENSTRUP00000064808	ENSTRUP00000053816	GTPase activating protein (SH3 domain) binding protein 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.403
G3bp1	fmr1	ENSTRUP00000064808	ENSTRUP00000074215	GTPase activating protein (SH3 domain) binding protein 1.	Fragile X mental retardation 1.	0.651
G3bp1	nufip2	ENSTRUP00000064808	ENSTRUP00000029639	GTPase activating protein (SH3 domain) binding protein 1.	Uncharacterized protein.	0.607
H2V528_TAKRU	G3bp1	ENSTRUP00000088053	ENSTRUP00000064808	Caprin-1_dimer domain-containing protein.	GTPase activating protein (SH3 domain) binding protein 1.	0.847
H2V528_TAKRU	fmr1	ENSTRUP00000088053	ENSTRUP00000074215	Caprin-1_dimer domain-containing protein.	Fragile X mental retardation 1.	0.704
H2V528_TAKRU	g3bp2	ENSTRUP00000088053	ENSTRUP00000028810	Caprin-1_dimer domain-containing protein.	Zgc:56304.	0.847
H2V528_TAKRU	nufip2	ENSTRUP00000088053	ENSTRUP00000029639	Caprin-1_dimer domain-containing protein.	Uncharacterized protein.	0.573
LOC101069808	G3bp1	ENSTRUP00000017523	ENSTRUP00000064808	LsmAD domain-containing protein.	GTPase activating protein (SH3 domain) binding protein 1.	0.635
LOC101069808	LOC101070680	ENSTRUP00000017523	ENSTRUP00000056299	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.768
LOC101069808	ddx6	ENSTRUP00000017523	ENSTRUP00000053816	LsmAD domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.768
LOC101069808	g3bp2	ENSTRUP00000017523	ENSTRUP00000028810	LsmAD domain-containing protein.	Zgc:56304.	0.635
LOC101069808	nufip2	ENSTRUP00000017523	ENSTRUP00000029639	LsmAD domain-containing protein.	Uncharacterized protein.	0.729
LOC101070680	G3bp1	ENSTRUP00000056299	ENSTRUP00000064808	Uncharacterized protein; Belongs to the DEAD box helicase family.	GTPase activating protein (SH3 domain) binding protein 1.	0.403
LOC101070680	LOC101069808	ENSTRUP00000056299	ENSTRUP00000017523	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.768
LOC101070680	ddx6	ENSTRUP00000056299	ENSTRUP00000053816	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.901
LOC101070680	g3bp2	ENSTRUP00000056299	ENSTRUP00000028810	Uncharacterized protein; Belongs to the DEAD box helicase family.	Zgc:56304.	0.403
LOC101070680	nufip2	ENSTRUP00000056299	ENSTRUP00000029639	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.596