STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrm1Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae). (374 aa)    
Predicted Functional Partners:
tada2a
Transcriptional adapter.
   
  
 0.884
mrm2
Mitochondrial rRNA methyltransferase 2.
  
  
 0.884
mrpl15
Mitochondrial ribosomal protein L15.
  
   0.807
mrpl58
Mitochondrial ribosomal protein L58.
   
 
 0.758
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
  
 0.751
LOC101078809
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
   0.724
LOC101078809-2
VPS35 retromer complex component.
    
   0.724
mrm3
SpoU_sub_bind domain-containing protein.
    
 
 0.716
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.713
trmt10c
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.709
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.