STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chmp2aCharged multivesicular body protein 2A. (220 aa)    
Predicted Functional Partners:
chmp2b
Charged multivesicular body protein 2Bb.
   
0.996
LOC101070321
Charged multivesicular body protein 5a.
   
 0.991
chmp1b
Chromatin modifying protein 1B.
   
0.990
chmp1a
Charged multivesicular body protein 1A.
   
0.990
reep1
Receptor accessory protein 1.
   
 0.987
ist1
IST1 factor associated with ESCRT-III.
   
 0.986
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.982
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
    
 0.978
vps36
Vacuolar protein sorting 36 homolog.
    
 0.973
vps25
Vacuolar protein sorting 25 homolog.
   
 0.972
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.