STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr46WD repeat domain 46. (635 aa)    
Predicted Functional Partners:
dcaf13
Ddb1 and cul4 associated factor 13.
   
 0.999
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.999
pdcd11
Programmed cell death 11.
   
 0.999
utp3
UTP3 small subunit processome component.
   
 0.999
noc4l
Nucleolar complex associated 4 homolog.
   
 0.999
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.999
utp20
UTP20 small subunit processome component.
   
 0.998
LOC101072761
UTP14C small subunit processome component.
   
 0.998
utp18
UTP18 small subunit processome component.
   
 0.998
utp6
UTP6 small subunit processome component.
   
 0.997
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.