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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem59Transmembrane protein 59. (325 aa)    
Predicted Functional Partners:
stip1
Stress-induced phosphoprotein 1.
  
 0.823
LOC101076976
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.822
LOC101069079
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
   
 0.822
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.816
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
  
 0.805
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.797
LOC101070860
TSC complex subunit 1b.
   
 0.792
H2UCW4_TAKRU
TSC complex subunit 1.
   
 0.792
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
 0.787
grpel1
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
 0.786
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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