STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101064983RabBD domain-containing protein. (572 aa)    
Predicted Functional Partners:
LOC101067730
Uncharacterized protein.
    
 0.878
rab27a
RAB27A, member RAS oncogene family.
    
 0.878
LOC101071476
RAB27B, member RAS oncogene family.
    
 0.878
myo5b
Myosin VB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.766
myo5c
Dilute domain-containing protein.
    
 0.766
myo5a
Myosin VAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.766
trmt12
tRNA methyltransferase 12 homolog.
      
 0.571
LOC101064039
A kinase (PRKA) anchor protein 12b.
      
 0.555
LOC101064443
Uncharacterized protein.
     
 0.521
LOC101063659
Synaptotagmin-like 1.
     
 0.521
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.