Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC1010702904F2 cell-surface antigen heavy chain-like isoform X1. (483 aa)    
Predicted Functional Partners:
LOC101077434
Si:ch73-352p4.8.
   
 0.994
slc7a11
Solute carrier family 7 member 11.
   
 0.994
slc7a5
Solute carrier family 7 member 5.
   
 0.987
LOC101062162
Solute carrier family 7 (L-type amino acid transporter), member 5.
   
 0.981
slc3a2
Solute carrier family 3 member 2a.
     
 
0.900
slc7a8
Solute carrier family 7 member 8b.
   
 0.830
slc7a10
Solute carrier family 7 member 10a.
   
 0.830
ENSTRUP00000067903
Asc-type amino acid transporter 1-like.
   
 0.830
LOC101077604
Solute carrier family 7 member 8a.
   
 0.830
slc7a9
Solute carrier family 7 member 9.
   
 0.790
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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