LOC101068322 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101068322

Si:ch211-87m7.2. (472 aa)

Predicted Functional Partners:

slc35a3

0.690

LOC101072876

0.634

mfsd3

0.612

mfsd9

0.599

H2SSE2_TAKRU

0.496

slc46a2

0.477

trmt13

0.445

SMAP1

0.445

smap2

0.445

mfsd5

0.443

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2SSE2_TAKRU	LOC101068322	ENSTRUP00000015329	ENSTRUP00000029805	Palmdelphin a.	Si:ch211-87m7.2.	0.496
LOC101068322	H2SSE2_TAKRU	ENSTRUP00000029805	ENSTRUP00000015329	Si:ch211-87m7.2.	Palmdelphin a.	0.496
LOC101068322	LOC101072876	ENSTRUP00000029805	ENSTRUP00000005590	Si:ch211-87m7.2.	Uncharacterized protein.	0.634
LOC101068322	SMAP1	ENSTRUP00000029805	ENSTRUP00000038495	Si:ch211-87m7.2.	Small ArfGAP 1.	0.445
LOC101068322	mfsd3	ENSTRUP00000029805	ENSTRUP00000070527	Si:ch211-87m7.2.	Major facilitator superfamily domain-containing protein 3.	0.612
LOC101068322	mfsd5	ENSTRUP00000029805	ENSTRUP00000053806	Si:ch211-87m7.2.	Molybdate-anion transporter; Mediates high-affinity intracellular uptake of the rare oligo-element molybdenum; Belongs to the major facilitator superfamily.	0.443
LOC101068322	mfsd9	ENSTRUP00000029805	ENSTRUP00000035022	Si:ch211-87m7.2.	Major facilitator superfamily domain containing 9.	0.599
LOC101068322	slc35a3	ENSTRUP00000029805	ENSTRUP00000045642	Si:ch211-87m7.2.	Solute carrier family 35 member A3a.	0.690
LOC101068322	slc46a2	ENSTRUP00000029805	ENSTRUP00000016538	Si:ch211-87m7.2.	Solute carrier family 46 member 2.	0.477
LOC101068322	smap2	ENSTRUP00000029805	ENSTRUP00000046444	Si:ch211-87m7.2.	Small ArfGAP2.	0.445
LOC101068322	trmt13	ENSTRUP00000029805	ENSTRUP00000021029	Si:ch211-87m7.2.	tRNA methyltransferase 13 homolog.	0.445
LOC101072876	LOC101068322	ENSTRUP00000005590	ENSTRUP00000029805	Uncharacterized protein.	Si:ch211-87m7.2.	0.634
LOC101072876	mfsd3	ENSTRUP00000005590	ENSTRUP00000070527	Uncharacterized protein.	Major facilitator superfamily domain-containing protein 3.	0.436
SMAP1	LOC101068322	ENSTRUP00000038495	ENSTRUP00000029805	Small ArfGAP 1.	Si:ch211-87m7.2.	0.445
mfsd3	LOC101068322	ENSTRUP00000070527	ENSTRUP00000029805	Major facilitator superfamily domain-containing protein 3.	Si:ch211-87m7.2.	0.612
mfsd3	LOC101072876	ENSTRUP00000070527	ENSTRUP00000005590	Major facilitator superfamily domain-containing protein 3.	Uncharacterized protein.	0.436
mfsd3	mfsd5	ENSTRUP00000070527	ENSTRUP00000053806	Major facilitator superfamily domain-containing protein 3.	Molybdate-anion transporter; Mediates high-affinity intracellular uptake of the rare oligo-element molybdenum; Belongs to the major facilitator superfamily.	0.699
mfsd3	mfsd9	ENSTRUP00000070527	ENSTRUP00000035022	Major facilitator superfamily domain-containing protein 3.	Major facilitator superfamily domain containing 9.	0.598
mfsd3	slc35a3	ENSTRUP00000070527	ENSTRUP00000045642	Major facilitator superfamily domain-containing protein 3.	Solute carrier family 35 member A3a.	0.436
mfsd5	LOC101068322	ENSTRUP00000053806	ENSTRUP00000029805	Molybdate-anion transporter; Mediates high-affinity intracellular uptake of the rare oligo-element molybdenum; Belongs to the major facilitator superfamily.	Si:ch211-87m7.2.	0.443