tardbp protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tardbp

TAR DNA binding protein, like. (322 aa)

Predicted Functional Partners:

srsf1

0.812

u2af2

0.804

ube2i

0.762

LOC101072687

0.762

hnrnpc

0.755

ewsr1

0.753

LOC101066595

0.745

hnrnpm

0.725

snrpd3

0.715

kctd2

0.707

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101066595	ewsr1	ENSTRUP00000043699	ENSTRUP00000055139	Uncharacterized protein.	EWS RNA-binding protein 1b.	0.574
LOC101066595	hnrnpc	ENSTRUP00000043699	ENSTRUP00000062192	Uncharacterized protein.	RRM domain-containing protein.	0.831
LOC101066595	hnrnpm	ENSTRUP00000043699	ENSTRUP00000069160	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein M.	0.666
LOC101066595	snrpd3	ENSTRUP00000043699	ENSTRUP00000072646	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.827
LOC101066595	tardbp	ENSTRUP00000043699	ENSTRUP00000030537	Uncharacterized protein.	TAR DNA binding protein, like.	0.745
LOC101066595	u2af2	ENSTRUP00000043699	ENSTRUP00000068126	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.852
LOC101072687	hnrnpc	ENSTRUP00000053339	ENSTRUP00000062192	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RRM domain-containing protein.	0.500
LOC101072687	tardbp	ENSTRUP00000053339	ENSTRUP00000030537	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	TAR DNA binding protein, like.	0.762
LOC101072687	ube2i	ENSTRUP00000053339	ENSTRUP00000040080	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.	0.900
ewsr1	LOC101066595	ENSTRUP00000055139	ENSTRUP00000043699	EWS RNA-binding protein 1b.	Uncharacterized protein.	0.574
ewsr1	hnrnpc	ENSTRUP00000055139	ENSTRUP00000062192	EWS RNA-binding protein 1b.	RRM domain-containing protein.	0.700
ewsr1	hnrnpm	ENSTRUP00000055139	ENSTRUP00000069160	EWS RNA-binding protein 1b.	Heterogeneous nuclear ribonucleoprotein M.	0.917
ewsr1	srsf1	ENSTRUP00000055139	ENSTRUP00000008650	EWS RNA-binding protein 1b.	Serine and arginine rich splicing factor 1a.	0.574
ewsr1	tardbp	ENSTRUP00000055139	ENSTRUP00000030537	EWS RNA-binding protein 1b.	TAR DNA binding protein, like.	0.753
hnrnpc	LOC101066595	ENSTRUP00000062192	ENSTRUP00000043699	RRM domain-containing protein.	Uncharacterized protein.	0.831
hnrnpc	LOC101072687	ENSTRUP00000062192	ENSTRUP00000053339	RRM domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.500
hnrnpc	ewsr1	ENSTRUP00000062192	ENSTRUP00000055139	RRM domain-containing protein.	EWS RNA-binding protein 1b.	0.700
hnrnpc	hnrnpm	ENSTRUP00000062192	ENSTRUP00000069160	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.987
hnrnpc	kctd2	ENSTRUP00000062192	ENSTRUP00000054607	RRM domain-containing protein.	Potassium channel tetramerization domain containing 2.	0.485
hnrnpc	snrpd3	ENSTRUP00000062192	ENSTRUP00000072646	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.684