xaf1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

xaf1

XIAP associated factor 1. (246 aa)

Predicted Functional Partners:

H2RYC9_TAKRU

0.914

LOC101067395

0.841

H2S8G9_TAKRU

0.690

ENSTRUP00000065894

0.690

ENSTRUP00000072994

0.690

ENSTRUP00000086796

0.690

irf7

0.689

rsad2

0.686

ifi35

0.609

ifih1

0.594

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000065894	H2RYC9_TAKRU	ENSTRUP00000065894	ENSTRUP00000005150	annotation not available	G domain-containing protein.	0.799
ENSTRUP00000065894	ifi35	ENSTRUP00000065894	ENSTRUP00000000444	annotation not available	Interferon-induced protein 35.	0.540
ENSTRUP00000065894	ifih1	ENSTRUP00000065894	ENSTRUP00000003254	annotation not available	Interferon induced with helicase C domain 1.	0.648
ENSTRUP00000065894	irf7	ENSTRUP00000065894	ENSTRUP00000028840	annotation not available	Interferon regulatory factor 7.	0.502
ENSTRUP00000065894	rsad2	ENSTRUP00000065894	ENSTRUP00000006354	annotation not available	Radical S-adenosyl methionine domain containing 2.	0.738
ENSTRUP00000065894	xaf1	ENSTRUP00000065894	ENSTRUP00000032395	annotation not available	XIAP associated factor 1.	0.690
ENSTRUP00000072994	H2RYC9_TAKRU	ENSTRUP00000072994	ENSTRUP00000005150	annotation not available	G domain-containing protein.	0.800
ENSTRUP00000072994	ifi35	ENSTRUP00000072994	ENSTRUP00000000444	annotation not available	Interferon-induced protein 35.	0.540
ENSTRUP00000072994	ifih1	ENSTRUP00000072994	ENSTRUP00000003254	annotation not available	Interferon induced with helicase C domain 1.	0.648
ENSTRUP00000072994	irf7	ENSTRUP00000072994	ENSTRUP00000028840	annotation not available	Interferon regulatory factor 7.	0.502
ENSTRUP00000072994	rsad2	ENSTRUP00000072994	ENSTRUP00000006354	annotation not available	Radical S-adenosyl methionine domain containing 2.	0.738
ENSTRUP00000072994	xaf1	ENSTRUP00000072994	ENSTRUP00000032395	annotation not available	XIAP associated factor 1.	0.690
ENSTRUP00000086796	H2RYC9_TAKRU	ENSTRUP00000086796	ENSTRUP00000005150	annotation not available	G domain-containing protein.	0.800
ENSTRUP00000086796	ifi35	ENSTRUP00000086796	ENSTRUP00000000444	annotation not available	Interferon-induced protein 35.	0.540
ENSTRUP00000086796	ifih1	ENSTRUP00000086796	ENSTRUP00000003254	annotation not available	Interferon induced with helicase C domain 1.	0.648
ENSTRUP00000086796	irf7	ENSTRUP00000086796	ENSTRUP00000028840	annotation not available	Interferon regulatory factor 7.	0.502
ENSTRUP00000086796	rsad2	ENSTRUP00000086796	ENSTRUP00000006354	annotation not available	Radical S-adenosyl methionine domain containing 2.	0.738
ENSTRUP00000086796	xaf1	ENSTRUP00000086796	ENSTRUP00000032395	annotation not available	XIAP associated factor 1.	0.690
H2RYC9_TAKRU	ENSTRUP00000065894	ENSTRUP00000005150	ENSTRUP00000065894	G domain-containing protein.	annotation not available	0.799
H2RYC9_TAKRU	ENSTRUP00000072994	ENSTRUP00000005150	ENSTRUP00000072994	G domain-containing protein.	annotation not available	0.800