STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070256Visinin-like 1b. (191 aa)    
Predicted Functional Partners:
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.693
LOC101070216
PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.601
LOC101078308
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.601
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.515
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 0.493
ENSTRUP00000008077
Calmodulin 1b.
   
 0.492
calm2
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
   
 0.492
calm2-2
Calmodulin 3.
   
 0.492
LOC101064505
Uncharacterized protein; Belongs to the calmodulin family.
   
 0.492
wdr90
WD repeat domain 90.
    
 0.491
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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