STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccar1Cell division cycle and apoptosis regulator 1. (1236 aa)    
Predicted Functional Partners:
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
  0.851
u2surp
U2 snRNP-associated SURP domain containing.
   
  
 0.758
TCERG1
Transcription elongation regulator 1.
   
 
  0.757
SIRT5
NAD-dependent protein deacylase sirtuin-5, mitochondrial; NAD-dependent lysine demalonylase, desuccinylase and deglutarylase that specifically removes malonyl, succinyl and glutaryl groups on target proteins. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo.
    
 0.754
sirt1
Sirtuin 1.
    
 0.754
casz1
Castor zinc finger 1.
      
 0.706
hpdl
4-hydroxyphenylpyruvate dioxygenase.
     
 0.664
hpd
4-hydroxyphenylpyruvate dioxygenase.
     
 0.664
PDZD7
PDZ domain-containing protein.
      
 0.653
LOC101075888
Sidoreflexin.
      
 0.653
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.