STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh5AlkB homolog 5, RNA demethylase. (380 aa)    
Predicted Functional Partners:
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.862
mettl14
Methyltransferase like 14; Belongs to the MT-A70-like family.
   
  
 0.671
wtap
WT1 associated protein.
   
  
 0.665
ythdf2
YTH N(6)-methyladenosine RNA binding protein 2.
      
 0.654
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
      
 0.652
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.650
YTHDC2
YTH domain containing 2.
     
 0.650
ythdc1
YTH domain-containing protein 1.
      
 0.639
mettl3
Methyltransferase like 3; Belongs to the MT-A70-like family.
   
  
 0.574
mettl16
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]
   
  
 0.573
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.