KHDRBS3 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KHDRBS3

KH RNA binding domain containing, signal transduction associated 3. (339 aa)

Predicted Functional Partners:

MED4

0.495

LOC101079928

0.489

fyn

0.489

LOC101064553

0.489

LOC101063191

0.489

LOC101061819

0.489

MED15

0.489

ENSTRUP00000082110

0.489

med23

0.484

med17

0.483

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000082110	KHDRBS3	ENSTRUP00000082110	ENSTRUP00000034293	annotation not available	KH RNA binding domain containing, signal transduction associated 3.	0.489
KHDRBS3	ENSTRUP00000082110	ENSTRUP00000034293	ENSTRUP00000082110	KH RNA binding domain containing, signal transduction associated 3.	annotation not available	0.489
KHDRBS3	LOC101061819	ENSTRUP00000034293	ENSTRUP00000072117	KH RNA binding domain containing, signal transduction associated 3.	Tyrosine-protein kinase.	0.489
KHDRBS3	LOC101063191	ENSTRUP00000034293	ENSTRUP00000063518	KH RNA binding domain containing, signal transduction associated 3.	Tyrosine-protein kinase fyna.	0.489
KHDRBS3	LOC101064553	ENSTRUP00000034293	ENSTRUP00000053431	KH RNA binding domain containing, signal transduction associated 3.	Tyrosine-protein kinase.	0.489
KHDRBS3	LOC101079928	ENSTRUP00000034293	ENSTRUP00000002602	KH RNA binding domain containing, signal transduction associated 3.	Tyrosine-protein kinase.	0.489
KHDRBS3	MED15	ENSTRUP00000034293	ENSTRUP00000080253	KH RNA binding domain containing, signal transduction associated 3.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.489
KHDRBS3	MED4	ENSTRUP00000034293	ENSTRUP00000035846	KH RNA binding domain containing, signal transduction associated 3.	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.495
KHDRBS3	fyn	ENSTRUP00000034293	ENSTRUP00000008304	KH RNA binding domain containing, signal transduction associated 3.	Tyrosine-protein kinase.	0.489
KHDRBS3	med17	ENSTRUP00000034293	ENSTRUP00000010138	KH RNA binding domain containing, signal transduction associated 3.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.483
KHDRBS3	med23	ENSTRUP00000034293	ENSTRUP00000051757	KH RNA binding domain containing, signal transduction associated 3.	Mediator complex subunit 23.	0.484
LOC101061819	KHDRBS3	ENSTRUP00000072117	ENSTRUP00000034293	Tyrosine-protein kinase.	KH RNA binding domain containing, signal transduction associated 3.	0.489
LOC101063191	KHDRBS3	ENSTRUP00000063518	ENSTRUP00000034293	Tyrosine-protein kinase fyna.	KH RNA binding domain containing, signal transduction associated 3.	0.489
LOC101064553	KHDRBS3	ENSTRUP00000053431	ENSTRUP00000034293	Tyrosine-protein kinase.	KH RNA binding domain containing, signal transduction associated 3.	0.489
LOC101079928	KHDRBS3	ENSTRUP00000002602	ENSTRUP00000034293	Tyrosine-protein kinase.	KH RNA binding domain containing, signal transduction associated 3.	0.489
MED15	KHDRBS3	ENSTRUP00000080253	ENSTRUP00000034293	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	KH RNA binding domain containing, signal transduction associated 3.	0.489
MED15	MED4	ENSTRUP00000080253	ENSTRUP00000035846	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.987
MED15	med17	ENSTRUP00000080253	ENSTRUP00000010138	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.990
MED15	med23	ENSTRUP00000080253	ENSTRUP00000051757	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator complex subunit 23.	0.986
MED4	KHDRBS3	ENSTRUP00000035846	ENSTRUP00000034293	Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	KH RNA binding domain containing, signal transduction associated 3.	0.495