STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101074551Sorting nexin 4. (458 aa)    
Predicted Functional Partners:
LOC101063817
PX domain-containing protein.
  
  
 
0.901
snx7
Sorting nexin 7.
  
 
 
0.821
snx30
Sorting nexin family member 30.
  
 
 
0.819
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.786
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.782
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.733
LOC101075403
Si:dkey-28n18.9.
   
 0.723
LOC101078809
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.683
LOC101078809-2
VPS35 retromer complex component.
   
 
 0.683
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
 0.652
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.