STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef2Uncharacterized protein. (809 aa)    
Predicted Functional Partners:
LOC101076147
Uncharacterized protein.
   
 0.633
LOC101070117
Ras homolog gene family, member Aa.
   
 0.633
LOC101064166
Uncharacterized protein.
   
 0.633
LOC101071942
Uncharacterized protein.
   
 0.633
LOC101077509
Ras homolog family member Ca.
   
 0.633
LOC101079238
T cell lymphoma invasion and metastasis 1a.
   
 
 0.627
rnd3
Rho family GTPase 3a.
   
 0.535
LOC101064615
Rho family GTPase 1b.
   
 0.535
RND1
Rho family GTPase 1.
   
 0.535
LOC101068809
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.
    
 0.519
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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