STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101066277Clathrin interactor 1b. (657 aa)    
Predicted Functional Partners:
ENSTRUP00000010653
Vesicle transport through interaction with t-SNAREs 1B.
    
 
 0.885
LOC101063020
Epidermal growth factor receptor pathway substrate 15 like 1.
    
 0.835
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.669
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 
 0.659
LOC101079603
Tyrosine-protein kinase receptor.
    
  0.658
LOC101063427
Tyrosine-protein kinase receptor.
    
  0.658
H2T0D0_TAKRU
Si:ch211-167j9.5.
     
  0.650
fgfr2
Fibroblast growth factor receptor.
     
  0.650
LOC101068538
Fibroblast growth factor receptor 4.
     
  0.650
egfr
Receptor protein-tyrosine kinase.
     
  0.650
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.