higd1a protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

higd1a

Putative growth hormone like protein-1. (87 aa)

Predicted Functional Partners:

LOC101064689

0.855

LOC101077666

0.824

LOC101067607

0.656

ENSTRUP00000072031

0.656

LOC101079784

0.656

ENSTRUP00000083632

0.656

pmpcb

0.645

LOC101077128

0.645

LOC101078739

0.627

LOC101076648

0.627

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000072031	LOC101064689	ENSTRUP00000072031	ENSTRUP00000086856	annotation not available	Cytochrome c oxidase subunit 6A, mitochondrial.	0.932
ENSTRUP00000072031	LOC101076648	ENSTRUP00000072031	ENSTRUP00000055176	annotation not available	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.855
ENSTRUP00000072031	LOC101077128	ENSTRUP00000072031	ENSTRUP00000074332	annotation not available	Ubiquinol-cytochrome c reductase core protein 1.	0.869
ENSTRUP00000072031	LOC101077666	ENSTRUP00000072031	ENSTRUP00000041658	annotation not available	Cytochrome c oxidase subunit 6A, mitochondrial.	0.932
ENSTRUP00000072031	LOC101078739	ENSTRUP00000072031	ENSTRUP00000041825	annotation not available	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.855
ENSTRUP00000072031	higd1a	ENSTRUP00000072031	ENSTRUP00000035778	annotation not available	Putative growth hormone like protein-1.	0.656
ENSTRUP00000072031	pmpcb	ENSTRUP00000072031	ENSTRUP00000004969	annotation not available	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.869
ENSTRUP00000083632	LOC101064689	ENSTRUP00000083632	ENSTRUP00000086856	annotation not available	Cytochrome c oxidase subunit 6A, mitochondrial.	0.932
ENSTRUP00000083632	LOC101076648	ENSTRUP00000083632	ENSTRUP00000055176	annotation not available	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.855
ENSTRUP00000083632	LOC101077128	ENSTRUP00000083632	ENSTRUP00000074332	annotation not available	Ubiquinol-cytochrome c reductase core protein 1.	0.869
ENSTRUP00000083632	LOC101077666	ENSTRUP00000083632	ENSTRUP00000041658	annotation not available	Cytochrome c oxidase subunit 6A, mitochondrial.	0.932
ENSTRUP00000083632	LOC101078739	ENSTRUP00000083632	ENSTRUP00000041825	annotation not available	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.855
ENSTRUP00000083632	higd1a	ENSTRUP00000083632	ENSTRUP00000035778	annotation not available	Putative growth hormone like protein-1.	0.656
ENSTRUP00000083632	pmpcb	ENSTRUP00000083632	ENSTRUP00000004969	annotation not available	Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.	0.869
LOC101064689	ENSTRUP00000072031	ENSTRUP00000086856	ENSTRUP00000072031	Cytochrome c oxidase subunit 6A, mitochondrial.	annotation not available	0.932
LOC101064689	ENSTRUP00000083632	ENSTRUP00000086856	ENSTRUP00000083632	Cytochrome c oxidase subunit 6A, mitochondrial.	annotation not available	0.932
LOC101064689	LOC101067607	ENSTRUP00000086856	ENSTRUP00000061459	Cytochrome c oxidase subunit 6A, mitochondrial.	Cytochrome c oxidase subunit 5B2.	0.997
LOC101064689	LOC101076648	ENSTRUP00000086856	ENSTRUP00000055176	Cytochrome c oxidase subunit 6A, mitochondrial.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.969
LOC101064689	LOC101077128	ENSTRUP00000086856	ENSTRUP00000074332	Cytochrome c oxidase subunit 6A, mitochondrial.	Ubiquinol-cytochrome c reductase core protein 1.	0.947
LOC101064689	LOC101077666	ENSTRUP00000086856	ENSTRUP00000041658	Cytochrome c oxidase subunit 6A, mitochondrial.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.903