STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sema4cUncharacterized protein; Belongs to the semaphorin family. (864 aa)    
Predicted Functional Partners:
LOC101071528
Macrophage stimulating 1 receptor a.
    
 0.639
mst1r
Macrophage stimulating 1 receptor b.
    
 0.639
met
Uncharacterized protein.
    
 0.639
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.601
LOC101068409
Plexin b2a.
    
 0.464
LOC101078657
Sema domain-containing protein.
    
0.464
H2UK42_TAKRU
Sema domain-containing protein.
    
0.464
LOC101072330
Plexin b2b.
    
 0.464
LOC101062443
Plexin A1.
    
0.457
plxnc1
Plexin C1.
    
 0.457
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.