STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfycNuclear transcription factor Y, gamma. (356 aa)    
Predicted Functional Partners:
nfya
Nuclear transcription factor Y, alpha, like.
    
 0.998
nfyb
Nuclear transcription factor Y, beta a.
   
 0.998
pole3
Polymerase (DNA directed), epsilon 3 (p17 subunit).
    
 0.929
gata3
GATA binding protein 3.
   
 
 0.595
GATA2
GATA binding protein 2.
   
 
 0.595
LOC101076071
GATA binding protein 2a.
   
 
 0.595
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 
 0.542
pole
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.530
hells
Helicase, lymphoid specific.
    
 
 0.514
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.514
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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