STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105416891Si:ch1073-390k14.1. (867 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
    
 0.776
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.651
per1
Period circadian clock 1b.
   
 0.651
LOC101065307
Neuronal PAS domain protein 2.
   
 0.624
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.603
LOC101065207
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
 0.603
LOC101078561
Period circadian clock 3.
   
 0.593
PER2
Period circadian regulator 2.
   
 0.593
ENSTRUP00000063599
Uncharacterized protein.
   
 0.593
LOC101061913
Period circadian clock 2.
   
 0.593
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.