STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stag3SCD domain-containing protein. (1204 aa)    
Predicted Functional Partners:
smc1a
Structural maintenance of chromosomes protein.
   
 0.934
smc3
Structural maintenance of chromosomes protein.
   
 0.909
LOC101078750
RAD21 cohesin complex component like 1.
   
 0.844
rad21
RAD21 cohesin complex component a.
   
 0.844
LOC101062834
Nipped-B protein.
   
 0.829
LOC101076906
Nipped-B protein.
   
 0.829
RBM20
RNA binding motif protein 20.
   
 0.823
pds5a
PDS5 cohesin associated factor A.
   
 0.807
H2RSW2_TAKRU
PDS5 cohesin associated factor B.
   
 0.807
LOC101062518
Sister chromatid cohesion protein PDS5 homolog B-like.
   
 0.807
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.